<<include etc/colors_fonts_patterns.conf>>
<<include ideogram.conf>>
<<include ticks.conf>>

<image>
<<include etc/image.conf>>
</image>

chromosomes_units = 10000
chromosomes_display_default = yes
# chromosomes_order = chr1,chr2
### single genomes

# specify the karyotype file here - try other karyotypes in data/karyotype
karyotype = karyotype.txt
# karyotype = data/karyotype/karyotype.drosophila.txt
# karyotype = data/karyotype/karyotype.mouse.txt
# karyotype = data/karyotype/karyotype.rat.txt

### multiple genomes

# to draw chromosomes from multiple karyotypes, 
# provide comma-separated list of files
# karyotype = data/karyotype/karyotype.human.txt

# adjust color using regular expressions matching chromosome names
# chromosomes_color = /hs/:red;/mm/:green;/rn/:blue

<highlights>

<highlight>
file = highlight_spec.txt
r0   = 1.15r
r1   = 1.18r
</highlight>

<highlight>
file = highlight_site.txt
r0   = 1.19r
r1   = 1.22r
</highlight>

<highlight>
file = highlight_all.txt
r0   = 1.23r
r1   = 1.26r
</highlight>

<highlight>
file = highlight_spec.txt
r0   = 0.98r
r1   = 1r
</highlight>

<highlight>
file = highlight_site.txt
r0   = 0.85r
r1   = 0.98r
stroke_color     = black
stroke_thickness = 2
</highlight>

</highlights>


<links>
radius = 0.98r
ribbon = yes
# bezier_radius = 0.55r
flat = yes
<link>
file = links.txt
stroke_color = black
stroke_thickness = 1

<rules>
<rule>
condition = 1
radius1 = 0.96r
</rule>
</rules>

</link>
</links>

<plots>
type         = text
color        = black
label_size   = 24p
label_font   = mono
label_format = eval(sprintf("%d%",var(label)))

#<plot>
#file           = label.txt
#r0             = 1.26r
#r1             = 1.3r
#show_links     = yes
#link_color     = black
#</plot>

</plots>

<<include etc/housekeeping.conf>>
