Qualimap Report: Counts QC

Input data and parameters 

Samples

sample03 none /media/bayegy/disk8/bayegy/transcriptome_dev/out_dir3/feature_counts_dir/gene_count.xls
sample12 none /media/bayegy/disk8/bayegy/transcriptome_dev/out_dir3/feature_counts_dir/gene_count.xls
sample06 none /media/bayegy/disk8/bayegy/transcriptome_dev/out_dir3/feature_counts_dir/gene_count.xls
sample08 none /media/bayegy/disk8/bayegy/transcriptome_dev/out_dir3/feature_counts_dir/gene_count.xls
sample11 none /media/bayegy/disk8/bayegy/transcriptome_dev/out_dir3/feature_counts_dir/gene_count.xls
sample07 none /media/bayegy/disk8/bayegy/transcriptome_dev/out_dir3/feature_counts_dir/gene_count.xls
sample02 none /media/bayegy/disk8/bayegy/transcriptome_dev/out_dir3/feature_counts_dir/gene_count.xls
sample04 none /media/bayegy/disk8/bayegy/transcriptome_dev/out_dir3/feature_counts_dir/gene_count.xls
sample01 none /media/bayegy/disk8/bayegy/transcriptome_dev/out_dir3/feature_counts_dir/gene_count.xls
sample05 none /media/bayegy/disk8/bayegy/transcriptome_dev/out_dir3/feature_counts_dir/gene_count.xls
sample10 none /media/bayegy/disk8/bayegy/transcriptome_dev/out_dir3/feature_counts_dir/gene_count.xls
sample09 none /media/bayegy/disk8/bayegy/transcriptome_dev/out_dir3/feature_counts_dir/gene_count.xls

Options

Species info: /home/bayegy/Databases/transcriptome/references/mmu/GCF_000001635.27_GRCm39_genomic_qualimap_info.txt
Counts threshold: 5

Counts Density 

Scatterplot Matrix 

Saturation 

Counts Distribution 

Features With Low Counts 

Contents

  • Input data & parameters
  • Counts Density
  • Scatterplot Matrix
  • Saturation
  • Counts Distribution
  • Features With Low Counts
    • 2022/04/28 16:48:46
    Generated by QualiMap v.2.2.2-dev